Research workbench
Structure of the ferrioxamine B transporter foxa from pseudomonas aeruginosa, apo state
Analyse Structure of the ferrioxamine B transporter foxa from pseudomonas aeruginosa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6I98
- Type
- protein
- Length
- 677 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferric hydroxamate uptake
- UniProt
- A0A0C7CQY7
- Ligands
- FTT, NA, NI, SO4
- Pockets
- 5 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferric hydroxamate uptake | protein | 677 | 4% helix, 59% strand | A0A0C7CQY7 |
Ligands and binding sites
- FTT · 3-hydroxy-tetradecanoic acid · ligand · 3 copies · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- NI · Nickel (II) ion · metal · chains A
- SO4 · Sulfate ion · ion · 12 copies · chains A
- GOL · Glycerol · additive · 4 copies · chains A
- C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1077 | 0.79 | 0.81 | 97 | GOL, SO4 |
| 2 | 586 | 0.77 | 0.84 | 71 | NA |
| 3 | 85 | 0.77 | 0.99 | 24 | empty |
| 4 | 97 | 0.74 | 0.96 | 24 | empty |
| 5 | 381 | 0.61 | 0.77 | 52 | SO4 |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6I98 · Structure of the ferrioxamine B transporter FoxA from Pseudomonas aeruginosa, apo state · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0C7CQY7
- Elsewhere: RCSB PDB 6I98 · PDBe 6I98 · UniProt A0A0C7CQY7
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