Research workbench
Crystal structure of rlpa spor domain from pseudomonas aeruginosa in complex with denuded glycan obtained by soaking
Analyse Crystal structure of rlpa spor domain from pseudomonas aeruginosa in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6I09
- Type
- protein
- Length
- 77 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endolytic peptidoglycan transglycosylase rlpa
- EC
- 4.2.2.-
- UniProt
- A0A0A8RDC6
- Ligands
- AMV, AMU, NAG
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endolytic peptidoglycan transglycosylase rlpa (EC 4.2.2.-) | protein | 77 | 32% helix, 39% strand | A0A0A8RDC6 |
Ligands and binding sites
- AMV · methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside · ligand · chains A
- AMU · N-acetyl-beta-muramic acid · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6I09 · Crystal structure of RlpA SPOR domain from Pseudomonas aeruginosa in complex with denuded… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0A8RDC6
- Elsewhere: RCSB PDB 6I09 · PDBe 6I09 · UniProt A0A0A8RDC6
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