Ligand · AMU
AMU · N-acetyl-beta-muramic acid
AMU, N-acetyl-beta-muramic acid (C11 H19 N O8, 293.3 g/mol), in the MolNFT structures on GenesisL1: bound in 13 records (10 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…
- Component
- AMU
- Formula
- C11 H19 N O8
- Class
- sugar
- Structures
- 13
- PDB entries
- 10
Binding sites
AMU in 13 structures; the first of them:
- 5E0B · Crystal structure of the complex of Peptidoglycan recognition protein PGRP-S with… · AMU C202 · binds ARG170, TRP66, CYS67, ARG85, LYS90, GLY91, ALA92, GLY95 and 4 more
- 6FCR · The X-ray Structure of Lytic Transglycosylase Slt inactive mutant E503Q from Pseudomonas… · AMU B2 · binds GLN503, SER512, GLY513, VAL514, ALA516, MET520, GLN521, MET523 and 5 more
- 6FCS · The X-ray Structure of Lytic Transglycosylase Slt inactive mutant E503Q from Pseudomonas… · AMU C3 · binds ILE423, ARG426, ARG427, TYR430, ARG459, MET507, ALA510, ARG511
- 6FCU · The X-ray Structure of Lytic Transglycosylase Slt inactive mutant E503Q from Pseudomonas… · AMU B3 · binds GLU606
- 7POD · Crystal structure of catalytic domain of LytB (E585Q) from Streptococcus pneumoniae in… · AMU B3 · binds THR416, TYR429, GLY602, ILE603, THR604, ALA605, TYR606, ASP607 and 4 more
- 8OW9 · Crystal structure of Tannerella forsythia MurNAc kinase MurK in complex with… · AMU B301 · binds ASN32, PHE34, GLY65, ALA66, GLY67, CYS68, ILE69, THR94 and 12 more
- 6FCR · The X-ray structure of lytic transglycosylase slt inactive mutant E503Q from pseudomonas… · AMU B2 · binds GLN503, SER512, VAL514, MET520, GLN521, TYR576, ASN577, GLU606 and 2 more
- 6FCS · The X-ray structure of lytic transglycosylase slt inactive mutant E503Q from pseudomonas… · AMU C3 · binds ARG426, TYR430, ARG459, MET507, ARG511
- 6FCU · The X-ray structure of lytic transglycosylase slt inactive mutant E503Q from pseudomonas… · AMU B3 · binds GLU606
- 6I09 · Crystal structure of rlpa spor domain from pseudomonas aeruginosa in complex with denuded… · AMU B3 · binds ALA273, PHE274, ALA275, ASN276, LEU307
- 6I0A · Crystal structure of rlpa spor domain from pseudomonas aeruginosa in complex with nuded… · AMU B3 · binds ALA273, PHE274, ALA275, ASN276
- 6I0N · Crystal structure of rlpa spor domain from pseudomonas aeruginosa in complex with denuded… · AMU B2 · binds ALA273, PHE274, ALA275, ASN276, LEU307
- 9LYZ · X-ray crystallography of the binding of the bacterial cell wall trisaccharide nam-nag-nam… · AMU B1 · binds GLU35, ASN46, ASP52, GLN57, ALA107, TRP108, VAL109, ALA110
Residues it binds most
ALA 15, ASN 14, GLY 7, ILE 6, SER 8, MET 8, TYR 8, ASP 6, ARG 3, GLN 5 (residue and the binding sites it lines).
Found with
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
- ACT · Acetate ion
- AMV · methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside
- NM6 · 2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-beta-D-glucopyranose
- MAG · methyl 2-acetamido-2-deoxy-beta-D-glucopyranoside
- AH0 · 2-(2-acetylamino-4-hydroxy-6,8-dioxa-bicyclo[3.2.1]oct-3-yloxy)-propionic acid
- GOL · Glycerol
- 66N · L-alaninamide
- API · 2,6-diaminopimelic acid
- CA · Calcium ion
- 1PE · Pentaethylene glycol
- PEG · Di(hydroxyethyl)ether
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