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Ligand · NM6

NM6 · 2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-beta-D-glucopyranose

NM6, 2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-beta-D-glucopyranose (C11 H20 N2 O7, 292.3 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å…

Component
NM6
Formula
C11 H20 N2 O7
Class
ligand
Structures
3
PDB entries
2

Binding sites

NM6 in 3 structures; the first of them:

  • 6FCU · The X-ray Structure of Lytic Transglycosylase Slt inactive mutant E503Q from Pseudomonas… · NM6 B7 · binds THR526, TYR557, ALA578, GLY579, PRO580, GLY581, ARG582
  • 6FCS · The X-ray structure of lytic transglycosylase slt inactive mutant E503Q from pseudomonas… · NM6 D3 · binds GLU529, TYR557, ALA578, GLY579, PRO580, GLY581, ARG582
  • 6FCU · The X-ray structure of lytic transglycosylase slt inactive mutant E503Q from pseudomonas… · NM6 B7 · binds THR526, TYR557, ALA578, GLY579, PRO580, GLY581, ARG582

Residues it binds most

GLY 3, ALA 3, ARG 3, PRO 3, TYR 3, THR 2, GLU 1 (residue and the binding sites it lines).

Found with

  • AMU · N-acetyl-beta-muramic acid
  • MAG · methyl 2-acetamido-2-deoxy-beta-D-glucopyranoside
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • ACT · Acetate ion
  • 66N · L-alaninamide
  • AMV · Methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside
  • API · 2,6-diaminopimelic acid

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