Research workbench
Structure of A3_BGFPD, an artificial bi-domain protein based on two different alpharep domains : A3 and a GFP binding domain (bgfpd)
Analyse Structure of A3_BGFPD, an artificial bi-domain protein based on two different… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6HWP
- Type
- protein
- Length
- 368 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- A3_BGFPD
- Ligands
- NA
- Pockets
- 3 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | A3_BGFPD | protein | 368 | 79% helix, 0% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 152 | 0.55 | 0.81 | 36 | empty |
| 2 | 132 | 0.49 | 0.79 | 21 | empty |
| 3 | 159 | 0.44 | 0.75 | 21 | empty |
Compared structures
- 6HWP · Structure of A3_bGFPD, an artificial bi-domain protein based on two different alphaRep… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6HWP · PDBe 6HWP
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