Research workbench
Crystal structure of truncated alternansucrase from leuconostoc mesenteroides nrrl B-1355
Analyse Crystal structure of truncated alternansucrase from leuconostoc mesenteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6HVG
- Type
- protein
- Length
- 2,452 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alternansucrase
- EC
- 2.4.1.140
- UniProt
- Q9RE05
- Ligands
- CA
- Pockets
- 20 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 22% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alternansucrase (EC 2.4.1.140) | protein | 1278 | 21% helix, 26% strand | Q9RE05 |
| B | Alternansucrase (EC 2.4.1.140) | protein | 1174 | 23% helix, 24% strand | Q9RE05 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.73 | 0.98 | 19 | empty |
| 2 | 111 | 0.73 | 0.94 | 24 | empty |
| 3 | 69 | 0.73 | 0.98 | 20 | empty |
| 4 | 144 | 0.71 | 0.90 | 24 | empty |
| 5 | 382 | 0.71 | 0.82 | 54 | empty |
Interfaces
1 interface between chains.
- A–B · 61 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6HVG · Crystal Structure of Truncated Alternansucrase from Leuconostoc mesenteroides NRRL B-1355 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RE05
- Elsewhere: RCSB PDB 6HVG · PDBe 6HVG · UniProt Q9RE05
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