Research workbench
Structure of the S1_25 family sulfatase module of the rhamnosidase FA22250 from formosa agariphila
Analyse Structure of the S1_25 family sulfatase module of the rhamnosidase FA22250 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6HR5
- Type
- protein
- Length
- 376 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-L-RHAMNOSIDASE/SULFATASE (GH78)
- UniProt
- T2KM26
- Ligands
- CA
- Pockets
- 4 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alpha-L-RHAMNOSIDASE/SULFATASE (GH78) | protein | 376 | 29% helix, 18% strand | T2KM26 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 290 | 0.55 | 0.76 | 41 | empty |
| 2 | 59 | 0.34 | 0.77 | 15 | empty |
| 3 | 57 | 0.32 | 0.77 | 14 | empty |
| 4 | 53 | 0.28 | 0.75 | 13 | empty |
Compared structures
- 6HR5 · Structure of the S1_25 family sulfatase module of the rhamnosidase FA22250 from Formosa… · the same entry in another collection · chain A against A, TM-score 1.00
- T2KM26 · AlphaFold monomer V2.0 prediction for bifunctional SULFATASE/ALPHA-L- rhamnosidase… · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt T2KM26
- Elsewhere: RCSB PDB 6HR5 · PDBe 6HR5 · UniProt T2KM26
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