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Crystal structure of human 14-3-3 beta in complex with cftr R-domain peptide PS753-PS768

Analyse Crystal structure of human 14-3-3 beta in complex with cftr R-domain peptide… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6HEP
Type
protein
Length
945 residues
Chains
6
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
14-3-3 protein BETA/ALPHA; Cystic fibrosis transmembrane conductance regulator
EC
3.6.3.49
UniProt
P31946, P13569
Ligands
ETE
Pockets
11 · best druggability 0.70

Structure

x-ray diffraction · 5 distinct chains · 83% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A14-3-3 protein BETA/ALPHAprotein23085% helix, 0% strandP31946
B14-3-3 protein BETA/ALPHAprotein23585% helix, 0% strandP31946
C14-3-3 protein BETA/ALPHAprotein22982% helix, 0% strandP31946
D14-3-3 protein BETA/ALPHAprotein22184% helix, 0% strandP31946
E, FCystic fibrosis transmembrane conductance regulator (EC 3.6.3.49)protein150% helix, 0% strandP13569

Ligands and binding sites

  • ETE · 2-{2-[2-2-(methoxy-ethoxy)-ethoxy]-ethoxy}-ethanol · ligand · 2 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
17440.700.7763empty
27810.700.7664empty
32360.570.7824empty
42190.560.7827empty
52510.530.7635empty

Interfaces

11 interfaces between chains.

  • A–B · 1170 Ų buried · 11 hydrogen bonds · protein-protein
  • C–D · 1031 Ų buried · 11 hydrogen bonds · protein-protein
  • D–F · 866 Ų buried · 17 hydrogen bonds · protein-protein
  • B–E · 855 Ų buried · 18 hydrogen bonds · protein-protein
  • B–C · 395 Ų buried · 2 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 modified (phosphorylation).

Compared structures

  • 6HEP · Crystal structure of human 14-3-3 beta in complex with CFTR R-domain peptide pS753-pS768 · the same entry in another collection · chain F against F, TM-score 1.00
  • P31946 · AlphaFold monomer V2.0 prediction for 14-3-3 protein BETA/ALPHA (P31946) · a predicted model of the same protein · chain C against A, TM-score 0.98
  • P13569 · AlphaFold monomer V2.0 prediction for cystic fibrosis transmembrane conductance regulator… · a predicted model of the same protein · chain E against A, TM-score 0.29

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