Research workbench
Crystal structure of human 14-3-3 beta in complex with cftr R-domain peptide PS753-PS768
Analyse Crystal structure of human 14-3-3 beta in complex with cftr R-domain peptide… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6HEP
- Type
- protein
- Length
- 945 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 14-3-3 protein BETA/ALPHA; Cystic fibrosis transmembrane conductance regulator
- EC
- 3.6.3.49
- UniProt
- P31946, P13569
- Ligands
- ETE
- Pockets
- 11 · best druggability 0.70
Structure
x-ray diffraction · 5 distinct chains · 83% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 14-3-3 protein BETA/ALPHA | protein | 230 | 85% helix, 0% strand | P31946 |
| B | 14-3-3 protein BETA/ALPHA | protein | 235 | 85% helix, 0% strand | P31946 |
| C | 14-3-3 protein BETA/ALPHA | protein | 229 | 82% helix, 0% strand | P31946 |
| D | 14-3-3 protein BETA/ALPHA | protein | 221 | 84% helix, 0% strand | P31946 |
| E, F | Cystic fibrosis transmembrane conductance regulator (EC 3.6.3.49) | protein | 15 | 0% helix, 0% strand | P13569 |
Ligands and binding sites
- ETE · 2-{2-[2-2-(methoxy-ethoxy)-ethoxy]-ethoxy}-ethanol · ligand · 2 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 744 | 0.70 | 0.77 | 63 | empty |
| 2 | 781 | 0.70 | 0.76 | 64 | empty |
| 3 | 236 | 0.57 | 0.78 | 24 | empty |
| 4 | 219 | 0.56 | 0.78 | 27 | empty |
| 5 | 251 | 0.53 | 0.76 | 35 | empty |
Interfaces
11 interfaces between chains.
- A–B · 1170 Ų buried · 11 hydrogen bonds · protein-protein
- C–D · 1031 Ų buried · 11 hydrogen bonds · protein-protein
- D–F · 866 Ų buried · 17 hydrogen bonds · protein-protein
- B–E · 855 Ų buried · 18 hydrogen bonds · protein-protein
- B–C · 395 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (phosphorylation).
Compared structures
- 6HEP · Crystal structure of human 14-3-3 beta in complex with CFTR R-domain peptide pS753-pS768 · the same entry in another collection · chain F against F, TM-score 1.00
- P31946 · AlphaFold monomer V2.0 prediction for 14-3-3 protein BETA/ALPHA (P31946) · a predicted model of the same protein · chain C against A, TM-score 0.98
- P13569 · AlphaFold monomer V2.0 prediction for cystic fibrosis transmembrane conductance regulator… · a predicted model of the same protein · chain E against A, TM-score 0.29
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31946
- Every structure of UniProt P13569
- Elsewhere: RCSB PDB 6HEP · PDBe 6HEP · UniProt P31946 · UniProt P13569
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