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Crystal structure of the gabarap in complex with the UBA5 lir motif

Analyse Crystal structure of the gabarap in complex with the UBA5 lir motif in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6HB9
Type: protein
Length: 129 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Gamma-aminobutyric acid receptor-associated protein
UniProt: O95166
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Gamma-aminobutyric acid receptor-associated protein	protein	129	29% helix, 19% strand	O95166

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.39	0.80	17	empty

Compared structures

6HB9 · Crystal structure of the GABARAP in complex with the UBA5 LIR motif · the same entry in another collection · chain A against A, TM-score 1.00
O95166 · AlphaFold monomer V2.0 prediction for gamma-aminobutyric acid receptor-associated protein… · a predicted model of the same protein · chain A against A, TM-score 0.86

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O95166
Elsewhere: RCSB PDB 6HB9 · PDBe 6HB9 · UniProt O95166

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