Research workbench
Ubij-SCP2 ubiquinone synthesis protein
Analyse Ubij-SCP2 ubiquinone synthesis protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6H6O
- Type
- protein
- Length
- 237 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquinone biosynthesis protein ubij
- UniProt
- P0ADP7
- Ligands
- LMR, CA
- Pockets
- 1 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubiquinone biosynthesis protein ubij | protein | 121 | 47% helix, 21% strand | P0ADP7 |
| B | Ubiquinone biosynthesis protein ubij | protein | 116 | 46% helix, 22% strand | P0ADP7 |
Ligands and binding sites
- LMR · (2S)-2-hydroxybutanedioic acid · ligand · 2 copies · chains A, B
- CA · Calcium ion · metal · 7 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1134 | 0.83 | 0.83 | 66 | empty |
Interfaces
1 interface between chains.
- A–B · 857 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0ADP7
- Elsewhere: RCSB PDB 6H6O · PDBe 6H6O · UniProt P0ADP7
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