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Crystal structure of human CSNK1A1 with A86

Analyse Crystal structure of human CSNK1A1 with A86 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6GZD
Type
protein
Length
297 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Casein kinase I isoform alpha
EC
2.7.11.1
UniProt
P48729
Ligands
TCE, LCI
Pockets
1 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 18% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACasein kinase I isoform alpha (EC 2.7.11.1)protein29739% helix, 18% strandP48729

Ligands and binding sites

  • TCE · 3,3',3''-phosphanetriyltripropanoic acid · ligand · chains A
  • LCI · [4-[[4-[5-(cyclopropylmethyl)-1-methyl-pyrazol-4-yl]-5-fluoranyl-pyrimidin-2-yl]amino]cyclohexyl]azanium · ligand · chains A
  • PEG · Di(hydroxyethyl)ether · additive · 6 copies · chains A
  • EDO · 1,2-ethanediol · additive · 5 copies · chains A
  • PGE · Triethylene glycol · additive · 3 copies · chains A
  • DMS · Dimethyl sulfoxide · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12420.660.8326LCI

Compared structures

  • 6GZD · Crystal structure of Human CSNK1A1 with A86 · the same entry in another collection · chain A against A, TM-score 1.00
  • P48729 · AlphaFold monomer V2.0 prediction for casein kinase I isoform alpha (P48729) · a predicted model of the same protein · chain A against A, TM-score 0.99

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