Research workbench

The hit-and-return system enables efficient time-resolved serial synchrotron crystallography: RADDAM2

Analyse The hit-and-return system enables efficient time-resolved serial synchrotron… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6GXL
Type: protein
Length: 598 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fluoroacetate dehalogenase
EC: 3.8.1.3
UniProt: Q6NAM1
Pockets: 2 · best druggability 0.45

Structure

x-ray diffraction · 2 distinct chains · 47% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Fluoroacetate dehalogenase (EC 3.8.1.3)	protein	298	47% helix, 16% strand	Q6NAM1
B	Fluoroacetate dehalogenase (EC 3.8.1.3)	protein	300	46% helix, 18% strand	Q6NAM1

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	155	0.45	0.76	31	empty
2	87	0.35	0.75	22	empty

Interfaces

1 interface between chains.

A–B · 1171 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

6GXL · The hit-and-return system enables efficient time-resolved serial synchrotron… · the same entry in another collection · chain A against A, TM-score 1.00
Q6NAM1 · AlphaFold monomer V2.0 prediction for fluoroacetate dehalogenase (Q6NAM1) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6NAM1
Elsewhere: RCSB PDB 6GXL · PDBe 6GXL · UniProt Q6NAM1

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