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Concanavalin a structure determined with data from the euxfel, the first mhz free electron laser

Analyse Concanavalin a structure determined with data from the euxfel, the first mhz… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6GW9
Type
protein
Length
233 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Concanavalin V
UniProt
C0HJY1
Ligands
MG, CA

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 46% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AConcanavalin Vprotein2335% helix, 46% strandC0HJY1

Ligands and binding sites

  • MG · Magnesium ion · metal · chains A
  • CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6GW9 · Concanavalin A structure determined with data from the EuXFEL, the first MHz free… · the same entry in another collection · chain A against A, TM-score 1.00
  • C0HJY1 · AlphaFold monomer V2.0 prediction for concanavalin V (C0HJY1) · a predicted model of the same protein · chain A against A, TM-score 0.99

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