Research workbench
Crystal structure of aspergillus oryzae catechol oxidase complexed with resorcinol
Analyse Crystal structure of aspergillus oryzae catechol oxidase complexed with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GSG
- Type
- protein
- Length
- 371 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Catechol oxidase
- UniProt
- Q2UNF9
- Ligands
- RCO, PEO, MAN, NAG, BMA, CU
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Catechol oxidase | protein | 371 | 40% helix, 12% strand | Q2UNF9 |
Ligands and binding sites
- RCO · Resorcinol · ligand · chains A
- PEO · Hydrogen peroxide · ligand · chains A
- MAN · alpha-D-mannopyranose · sugar · 5 copies · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
- BMA · beta-D-mannopyranose · sugar
- CU · Copper (II) ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 300 | 0.76 | 0.88 | 37 | RCO, PEO |
Modifications
Observed in the structure: 4 glycan, 3 disulfide, 1 modified (disulfide, N-glycosylation, O-glycosylation, phosphorylation).
Compared structures
- 6GSG · Crystal structure of Aspergillus oryzae catechol oxidase complexed with resorcinol · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2UNF9
- Elsewhere: RCSB PDB 6GSG · PDBe 6GSG · UniProt Q2UNF9
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