Research workbench
Structure of the arginine-bound form of truncated (residues 20-233) argbp from T. maritima
Analyse Structure of the arginine-bound form of truncated (residues 20-233) argbp from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GGV
- Type
- protein
- Length
- 425 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Amino acid ABC transporter, periplasmic amino acid-binding protein
- UniProt
- Q9WZ62
- Ligands
- ARG, CD
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Amino acid ABC transporter, periplasmic amino acid-binding protein | protein | 212 | 35% helix, 26% strand | Q9WZ62 |
| B | Amino acid ABC transporter, periplasmic amino acid-binding protein | protein | 213 | 35% helix, 26% strand | Q9WZ62 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 214 | 0.60 | 0.81 | 32 | empty |
| 2 | 357 | 0.60 | 0.77 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 644 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 6GGV · Structure of the arginine-bound form of truncated (residues 20-233) ArgBP from T. maritima · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WZ62
- Elsewhere: RCSB PDB 6GGV · PDBe 6GGV · UniProt Q9WZ62
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