Research workbench
Structure and reactivity of a siderophore-interacting protein from the marine bacterium shewanella reveals unanticipated functional versatility.
Analyse Structure and reactivity of a siderophore-interacting protein from the marine… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GEH
- Type
- protein
- Length
- 256 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- FAD-binding 9, siderophore-interacting domain protein
- UniProt
- Q080S8
- Ligands
- FAD, NA, MG
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | FAD-binding 9, siderophore-interacting domain protein | protein | 256 | 26% helix, 33% strand | Q080S8 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- NA · Sodium ion · metal · 24 copies · chains A
- MG · Magnesium ion · metal · 4 copies · chains A
- DMS · Dimethyl sulfoxide · additive · 3 copies · chains A
- FMT · Formic acid · additive · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 590 | 0.73 | 0.81 | 57 | MG, DMS, NA, GOL, FAD |
Compared structures
- 6GEH · Structure and reactivity of a siderophore-interacting protein from the marine bacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q080S8
- Elsewhere: RCSB PDB 6GEH · PDBe 6GEH · UniProt Q080S8
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