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Exendin-4 based dual glp-1/GLUCAGON receptor agonist

Analyse Exendin-4 based dual glp-1/GLUCAGON receptor agonist in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6GDZ
Type
protein
Length
39 residues
Chains
1
Method
solution nmr
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Exendin-4
UniProt
P26349
Ligands
EVT, NH2

Structure

solution nmr · 1 distinct chain · 79% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AExendin-4protein3979% helix, 0% strandP26349

Ligands and binding sites

  • EVT · (2~{S})-2-[[(4~{S})-4-(hexadecanoylamino)-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]pentanedioic acid · ligand · chains A
  • NH2 · Amino group · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 2 modified, 1 covalent (nonstandard, covalent ligand).

Compared structures

  • 6GDZ · exendin-4 based dual GLP-1/glucagon receptor agonist · the same entry in another collection · chain A against A, TM-score 1.00
  • P26349 · AlphaFold monomer V2.0 prediction for exendin-4 (P26349) · a predicted model of the same protein · chain A against A, TM-score 0.77

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