Research workbench

Dihydroorotase from aquifex aeolicus standard (P,T)

Analyse Dihydroorotase from aquifex aeolicus standard (P,T) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6GDE
Type: protein
Length: 364 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dihydroorotase
EC: 3.5.2.3
UniProt: O66990
Ligands: ZN
Pockets: 1 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dihydroorotase (EC 3.5.2.3)	protein	364	29% helix, 26% strand	O66990

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	201	0.53	0.78	29	empty

Compared structures

6GDE · Dihydroorotase from aquifex aeolicus standard (P,T) · the same entry in another collection · chain A against A, TM-score 1.00
O66990 · AlphaFold monomer V2.0 prediction for dihydroorotase (O66990) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O66990
Elsewhere: RCSB PDB 6GDE · PDBe 6GDE · UniProt O66990

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.