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Structure of hur RRM3 in complex with RNA
Analyse Structure of hur RRM3 in complex with RNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GD2
- Type
- protein + RNA
- Length
- 251 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Elav-like protein 1; RNA (5'-R(P*UP*UP*UP*AP*UP*UP*U)-3')
- UniProt
- Q15717
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 4 distinct chains · 27% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Elav-like protein 1 | protein | 84 | 26% helix, 37% strand | Q15717 |
| B | Elav-like protein 1 | protein | 81 | 27% helix, 38% strand | Q15717 |
| C | Elav-like protein 1 | protein | 79 | 28% helix, 39% strand | Q15717 |
| D | RNA (5'-R(P*UP*UP*UP*AP*UP*UP*U)-3') | rna | 7 | — | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.32 | 0.75 | 13 | empty |
Interfaces
3 interfaces between chains.
- A–D · 620 Ų buried · 17 hydrogen bonds · protein-nucleic
- B–D · 541 Ų buried · 9 hydrogen bonds · protein-nucleic
- A–B · 46 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q15717
- Elsewhere: RCSB PDB 6GD2 · PDBe 6GD2 · UniProt Q15717
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