Research workbench
Crystal structure of the T1L reovirus SIGMA1 coiled coil tail (iodide)
Analyse Crystal structure of the T1L reovirus SIGMA1 coiled coil tail (iodide) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GAJ
- Type
- protein
- Length
- 393 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer capsid protein sigma-1
- UniProt
- P04506
- Ligands
- CL, IOD
Structure
x-ray diffraction · 2 distinct chains · 98% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Outer capsid protein sigma-1 | protein | 131 | 97% helix, 0% strand | P04506 |
| B, C | Outer capsid protein sigma-1 | protein | 131 | 98% helix, 0% strand | P04506 |
Ligands and binding sites
- CL · Chloride ion · ion · 4 copies · chains A, B, C
- IOD · Iodide ion · ion · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- B–C · 2651 Ų buried · 19 hydrogen bonds · protein-protein
- A–C · 2646 Ų buried · 24 hydrogen bonds · protein-protein
- A–B · 2607 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 6GAJ · Crystal structure of the T1L reovirus sigma1 coiled coil tail (iodide) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04506
- Elsewhere: RCSB PDB 6GAJ · PDBe 6GAJ · UniProt P04506
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