Research workbench
Structure of the UB2H domain of E.COLI PBP1B in complex with lpob
Analyse Structure of the UB2H domain of E.COLI PBP1B in complex with lpob in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6G5R
- Type
- protein
- Length
- 114 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Penicillin-binding protein 1B
- EC
- 2.4.1.129, 3.4.16.4
- UniProt
- P02919
- Pockets
- 3 · best druggability 0.51
Structure
solution nmr · 1 distinct chain · 10% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Penicillin-binding protein 1B (EC 2.4.1.129, 3.4.16.4) | protein | 114 | 10% helix, 24% strand | P02919 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 61 | 0.51 | 0.86 | 24 | empty |
| 2 | 85 | 0.36 | 0.76 | 16 | empty |
| 3 | 75 | 0.34 | 0.75 | 18 | empty |
Compared structures
- 6G5R · Structure of the UB2H domain of E.coli PBP1B in complex with LpoB · the same entry in another collection · chain A against A, TM-score 1.00
- P02919 · AlphaFold monomer V2.0 prediction for penicillin-binding protein 1B (P02919) · a predicted model of the same protein · chain A against A, TM-score 0.53
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02919
- Elsewhere: RCSB PDB 6G5R · PDBe 6G5R · UniProt P02919
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