Research workbench
Crystal structure of the periplasmic domain of tgpa from pseudomonas aeruginosa bound to ethylmercury
Analyse Crystal structure of the periplasmic domain of tgpa from pseudomonas aeruginosa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6G4H
- Type
- protein
- Length
- 278 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein-glutamine gamma-glutamyltransferase
- EC
- 2.3.2.13
- UniProt
- Q9HZX3
- Ligands
- EMC, PO4
- Pockets
- 3 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein-glutamine gamma-glutamyltransferase (EC 2.3.2.13) | protein | 278 | 28% helix, 31% strand | Q9HZX3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 118 | 0.57 | 0.84 | 23 | empty |
| 2 | 216 | 0.53 | 0.77 | 26 | empty |
| 3 | 117 | 0.50 | 0.81 | 18 | PO4, EMC |
Compared structures
- 6G4H · Crystal structure of the periplasmic domain of TgpA from Pseudomonas aeruginosa bound to… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9HZX3 · AlphaFold monomer V2.0 prediction for protein-glutamine gamma- glutamyltransferase… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HZX3
- Elsewhere: RCSB PDB 6G4H · PDBe 6G4H · UniProt Q9HZX3
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