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Human N-myristoyltransferase (NMT1) with myristoyl-CoA and inhibitor bound

Analyse Human N-myristoyltransferase (NMT1) with myristoyl-CoA and inhibitor bound in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6FZ3
Type
protein
Length
765 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P30419
Ligands
EBK, MYA, MG

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein387—P30419
B—protein378—P30419

Ligands and binding sites

  • EBK · 2,6-bis(chloranyl)-4-[2-(4-methylpiperazin-1-yl) pyridin-4-yl]-~{N}-(1,3,5-trimethylpyrazol-4-yl) benzenesulfonamide · ligand · 2 copies · chains A, B
  • MYA · Tetradecanoyl-coa · ligand · 2 copies · chains A, B
  • MG · Magnesium ion · metal · 2 copies · chains A, B
  • GOL · Glycerol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6FZ3 · Human N-myristoyltransferase (NMT1) with Myristoyl-CoA and inhibitor bound · the same entry in another collection · chain A against A, TM-score 1.00
  • P30419 · AlphaFold monomer V2.0 prediction for glycylpeptide N-tetradecanoyltransferase 1 (P30419) · a predicted model of the same protein · chain B against A, TM-score 1.00

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