Research workbench

Crystal structure of pholiota squarrosa lectin in complex with a decasaccharide

Analyse Crystal structure of pholiota squarrosa lectin in complex with a decasaccharide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6FX2
Type: protein
Length: 83 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lectin
Ligands: C4W, NAG, MAN, BMA, GAL, FUC

Structure

x-ray diffraction · 2 distinct chains · 0% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lectin	protein	40	0% helix, 45% strand	—
B	Lectin	protein	43	0% helix, 42% strand	—

Ligands and binding sites

C4W · 1-azido-beta-N-acetyl-D-glucosamine · ligand · 2 copies · chains B
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A, B
MAN · alpha-D-mannopyranose · sugar · 3 copies · chains A, B
BMA · beta-D-mannopyranose · sugar · 2 copies · chains A, B
GAL · beta-D-galactopyranose · sugar · 2 copies · chains A, B
FUC · alpha-L-fucopyranose · sugar · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 97 Å² buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

6FX2 · crystal structure of Pholiota squarrosa lectin in complex with a decasaccharide · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6FX2 · PDBe 6FX2

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.