Research workbench
DNA polymerase sliding clamp from escherichia COLI with bound P7 peptide
Analyse DNA polymerase sliding clamp from escherichia COLI with bound P7 peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6FVL
- Type
- protein
- Length
- 1,483 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0A988
- Ligands
- ACE
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 368 | — | P0A988 |
| B | — | protein | 364 | — | P0A988 |
| C | — | protein | 366 | — | P0A988 |
| D | — | protein | 365 | — | P0A988 |
| H, I, J, K | — | protein | 5 | — | — |
Ligands and binding sites
- ACE · Acetyl group · ligand · 4 copies · chains A, H, B, I, C, J, D, K
- 1PE · Pentaethylene glycol · additive · 17 copies · chains A, B, D, C, I, K
- GOL · Glycerol · additive · 7 copies · chains A, H, B, D, I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6FVL · DNA polymerase sliding clamp from Escherichia coli with bound P7 peptide · the same entry in another collection · chain K against K, TM-score 1.00
- P0A988 · AlphaFold monomer V2.0 prediction for beta sliding clamp (P0A988) · a predicted model of the same protein · chain D against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A988
- Elsewhere: RCSB PDB 6FVL · PDBe 6FVL · UniProt P0A988
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