Research workbench
Crystal structure of apo form of glutathione transferase omega 3S from trametes versicolor
Analyse Crystal structure of apo form of glutathione transferase omega 3S from trametes… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6F43
- Type
- protein
- Length
- 482 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutathione transferase
- EC
- 2.5.1.18
- Ligands
- CA
- Pockets
- 4 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glutathione transferase (EC 2.5.1.18) | protein | 241 | 55% helix, 8% strand | — |
Ligands and binding sites
- CA · Calcium ion · metal · chains B
- ACT · Acetate ion · additive · 4 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1045 | 0.84 | 0.84 | 82 | ACT |
| 2 | 179 | 0.52 | 0.78 | 23 | PEG |
| 3 | 202 | 0.51 | 0.77 | 22 | PEG |
| 4 | 113 | 0.39 | 0.75 | 24 | GOL |
Interfaces
1 interface between chains.
- A–B · 1054 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 6F43 · Crystal structure of apo form of Glutathione transferase Omega 3S from Trametes versicolor · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6F43 · PDBe 6F43
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