Research workbench
Double cubane cluster oxidoreductase
Analyse Double cubane cluster oxidoreductase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ENO
- Type
- protein
- Length
- 421 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dehydratase family protein
- UniProt
- Q3AET9
- Ligands
- BJ8
- Pockets
- 5 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dehydratase family protein | protein | 421 | 55% helix, 10% strand | Q3AET9 |
Ligands and binding sites
- BJ8 · Double cubane cluster · ligand · chains A
- GOL · Glycerol · additive · 2 copies · chains A
- CIT · Citric acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 216 | 0.79 | 0.93 | 39 | BJ8 |
| 2 | 170 | 0.66 | 0.86 | 35 | GOL |
| 3 | 233 | 0.58 | 0.79 | 26 | empty |
| 4 | 61 | 0.40 | 0.80 | 17 | empty |
| 5 | 55 | 0.38 | 0.80 | 17 | empty |
Compared structures
- 6ENO · Double cubane cluster oxidoreductase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3AET9
- Elsewhere: RCSB PDB 6ENO · PDBe 6ENO · UniProt Q3AET9
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