Research workbench
Oryza sativa DWARF14
Analyse Oryza sativa DWARF14 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ELX
- Type
- protein
- Length
- 534 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Strigolactone esterase D14
- EC
- 3.1.-.-
- UniProt
- Q10QA5
- Pockets
- 5 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Strigolactone esterase D14 (EC 3.1.-.-) | protein | 267 | 48% helix, 15% strand | Q10QA5 |
Ligands and binding sites
- GOL · Glycerol · additive · 7 copies · chains A, B
- MRD · (4R)-2-methylpentane-2,4-diol · additive · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 162 | 0.69 | 0.87 | 21 | MRD |
| 2 | 136 | 0.68 | 0.88 | 20 | MPD |
| 3 | 252 | 0.52 | 0.76 | 34 | empty |
| 4 | 57 | 0.40 | 0.81 | 17 | empty |
| 5 | 72 | 0.31 | 0.74 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 573 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q10QA5
- Elsewhere: RCSB PDB 6ELX · PDBe 6ELX · UniProt Q10QA5
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