Research workbench
C-terminal domain of MDPPO1 upon self-cleavage (ccleaved-domain)
Analyse C-terminal domain of MDPPO1 upon self-cleavage (ccleaved-domain) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ELT
- Type
- protein
- Length
- 133 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyphenol oxidase, chloroplastic
- Ligands
- CA
- Pockets
- 2 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyphenol oxidase, chloroplastic | protein | 133 | 11% helix, 46% strand | — |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 95 | 0.39 | 0.76 | 21 | empty |
| 2 | 50 | 0.32 | 0.78 | 15 | empty |
Compared structures
- 6ELT · C-terminal domain of MdPPO1 upon self-cleavage (Ccleaved-domain) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6ELT · PDBe 6ELT
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.