Research workbench
Structure of latent apple tyrosinase (MDPPO1)
Analyse Structure of latent apple tyrosinase (MDPPO1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ELS
- Type
- protein
- Length
- 459 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyphenol oxidase, chloroplastic
- Ligands
- CU, O
- Pockets
- 7 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyphenol oxidase, chloroplastic | protein | 459 | 32% helix, 21% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 61 | 0.70 | 0.97 | 26 | empty |
| 2 | 201 | 0.50 | 0.76 | 34 | empty |
| 3 | 141 | 0.46 | 0.77 | 25 | empty |
| 4 | 65 | 0.44 | 0.83 | 18 | empty |
| 5 | 77 | 0.34 | 0.75 | 20 | empty |
Compared structures
- 6ELS · Structure of latent apple tyrosinase (MdPPO1) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6ELS · PDBe 6ELS
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