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The N-terminal domain of pa endonuclease from the influenza H1N1 virus in complex with 1-(4-(1H-tetrazol-5-YL)PHENYL)-5-hydroxy-2- methylpyridin-4(1H)-one

Analyse The N-terminal domain of pa endonuclease from the influenza H1N1 virus in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6E6X
Type: protein
Length: 175 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polymerase acidic protein
EC: 3.1.-.-
UniProt: C3W5S0
Ligands: HWM, MN
Pockets: 1 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polymerase acidic protein (EC 3.1.-.-)	protein	175	54% helix, 13% strand	C3W5S0

Ligands and binding sites

HWM · 5-hydroxy-2-methyl-1-[4-(1H-tetrazol-5-yl) phenyl]pyridin-4(1H)-one · ligand · chains A
MN · Manganese (II) ion · metal · 2 copies · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	528	0.65	0.77	46	MN, HWM, EDO

Compared structures

6E6X · The N-terminal domain of PA endonuclease from the influenza H1N1 virus in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C3W5S0
Elsewhere: RCSB PDB 6E6X · PDBe 6E6X · UniProt C3W5S0

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