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Structure of rhodothermus marinus cdne C-ump-AMP synthase

Analyse Structure of rhodothermus marinus cdne C-ump-AMP synthase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6E0K
Type: protein
Length: 295 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: CGAS/DNCV-like nucleotidyltransferase in E. COLI homolog
UniProt: G2SLH8
Pockets: 2 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	CGAS/DNCV-like nucleotidyltransferase in E. COLI homolog	protein	295	44% helix, 18% strand	G2SLH8

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	451	0.61	0.76	43	empty
2	93	0.37	0.75	15	empty

Compared structures

6E0K · Structure of Rhodothermus marinus CdnE c-UMP-AMP synthase · the same entry in another collection · chain A against A, TM-score 1.00
G2SLH8 · AlphaFold monomer V2.0 prediction for cyclic ump-AMP synthase (G2SLH8) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G2SLH8
Elsewhere: RCSB PDB 6E0K · PDBe 6E0K · UniProt G2SLH8

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