Research workbench
Endo-fucoidan hydrolase MFFCNA4_H294Q from glycoside hydrolase family 107
Analyse Endo-fucoidan hydrolase MFFCNA4_H294Q from glycoside hydrolase family 107 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DMS
- Type
- protein
- Length
- 703 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-1,4-endofucoidanase
- UniProt
- Q08I46
- Ligands
- CA
- Pockets
- 5 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alpha-1,4-endofucoidanase | protein | 703 | 20% helix, 29% strand | Q08I46 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 663 | 0.63 | 0.74 | 56 | empty |
| 2 | 176 | 0.54 | 0.79 | 30 | EDO |
| 3 | 340 | 0.53 | 0.74 | 43 | empty |
| 4 | 184 | 0.48 | 0.76 | 24 | empty |
| 5 | 54 | 0.32 | 0.77 | 14 | empty |
Compared structures
- 6DMS · Endo-fucoidan hydrolase MfFcnA4_H294Q from glycoside hydrolase family 107 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08I46
- Elsewhere: RCSB PDB 6DMS · PDBe 6DMS · UniProt Q08I46
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