Research workbench
Hybrid model of TRPC3 in gdn
Analyse Hybrid model of TRPC3 in gdn in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DJS
- Type
- protein
- Length
- 1,960 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Short transient receptor potential channel 3
- UniProt
- Q13507
- Pockets
- 20 · best druggability 0.82
Structure
electron microscopy · 1 distinct chain · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Short transient receptor potential channel 3 | protein | 490 | 70% helix, 0% strand | Q13507 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 966 | 0.82 | 0.83 | 72 | empty |
| 2 | 1040 | 0.82 | 0.83 | 82 | empty |
| 3 | 1060 | 0.82 | 0.83 | 83 | empty |
| 4 | 1112 | 0.82 | 0.83 | 86 | empty |
| 5 | 716 | 0.79 | 0.83 | 80 | empty |
Interfaces
6 interfaces between chains.
- B–C · 1379 Ų buried · 19 hydrogen bonds · protein-protein
- A–D · 1371 Ų buried · 20 hydrogen bonds · protein-protein
- C–D · 1370 Ų buried · 20 hydrogen bonds · protein-protein
- A–B · 1369 Ų buried · 19 hydrogen bonds · protein-protein
- B–D · 34 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q13507
- Elsewhere: RCSB PDB 6DJS · PDBe 6DJS · UniProt Q13507
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