Research workbench
Crystal structure of signal recognition particle receptor ftsy from elizabethkingia anophelis in complex with GDP
Analyse Crystal structure of signal recognition particle receptor ftsy from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6CY5
- Type
- protein
- Length
- 634 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Signal recognition particle receptor ftsy
- UniProt
- A0A077EFA5
- Ligands
- GDP, MG
- Pockets
- 8 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 51% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Signal recognition particle receptor ftsy | protein | 316 | 51% helix, 14% strand | A0A077EFA5 |
| B | Signal recognition particle receptor ftsy | protein | 318 | 51% helix, 14% strand | A0A077EFA5 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · 3 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 8 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 831 | 0.72 | 0.78 | 77 | MG, EDO |
| 2 | 86 | 0.41 | 0.79 | 18 | empty |
| 3 | 96 | 0.40 | 0.77 | 19 | empty |
| 4 | 137 | 0.38 | 0.73 | 24 | empty |
| 5 | 78 | 0.33 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 534 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 6CY5 · Crystal structure of Signal recognition particle receptor FtsY from Elizabethkingia… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A077EFA5
- Elsewhere: RCSB PDB 6CY5 · PDBe 6CY5 · UniProt A0A077EFA5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.