Research workbench

Crystal structure of DR15 presenting the RQ13 peptide

Analyse Crystal structure of DR15 presenting the RQ13 peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6CPO
Type: protein
Length: 762 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P01903, D7RIH9, P04591
Ligands: NAG, PO4

Structure

x-ray diffraction · 5 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	178	—	P01903
B	—	protein	189	—	D7RIH9
C, F	—	protein	13	—	P04591
D	—	protein	179	—	P01903
E	—	protein	190	—	D7RIH9

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A, B, D
PO4 · Phosphate ion · ion · 2 copies · chains B, D, E
PGE · Triethylene glycol · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6CPO · Crystal structure of DR15 presenting the RQ13 peptide · the same entry in another collection · chain B against B, TM-score 1.00
P01903 · AlphaFold monomer V2.0 prediction for HLA class II histocompatibility antigen, dr alpha… · a predicted model of the same protein · chain D against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01903
Every structure of UniProt D7RIH9
Every structure of UniProt P04591
Elsewhere: RCSB PDB 6CPO · PDBe 6CPO · UniProt P01903 · UniProt D7RIH9 · UniProt P04591

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.