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Crystal structure of an AF10 fragment

Analyse Crystal structure of an AF10 fragment in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6CKN
Type: protein
Length: 132 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein af-10
UniProt: P55197
Ligands: UNX

Structure

x-ray diffraction · 1 distinct chain · 89% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Protein af-10	protein	66	89% helix, 0% strand	P55197

Ligands and binding sites

UNX · Unknown atom or ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 729 Å² buried · 5 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

6CKN · Crystal structure of an AF10 fragment · the same entry in another collection · chain A against A, TM-score 1.00
P55197 · AlphaFold monomer V2.0 prediction for protein af-10 (P55197) · a predicted model of the same protein · chain A against A, TM-score 0.71

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P55197
Elsewhere: RCSB PDB 6CKN · PDBe 6CKN · UniProt P55197

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