Research workbench
Crystal structure analysis of clpsn heterodimer tetragonal form
Analyse Crystal structure analysis of clpsn heterodimer tetragonal form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1MBV
- Type
- protein
- Length
- 228 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP-dependent clp protease ATP-binding subunit clp a; Protein ylja
- UniProt
- P0ABH9, P0A8Q6
- Pockets
- 2 · best druggability 0.47
Structure
x-ray diffraction · 2 distinct chains · 57% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATP-dependent clp protease ATP-binding subunit clp a | protein | 142 | 62% helix, 6% strand | P0ABH9 |
| B | Protein ylja | protein | 86 | 50% helix, 24% strand | P0A8Q6 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 137 | 0.47 | 0.77 | 26 | empty |
| 2 | 61 | 0.34 | 0.77 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 809 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 1MBV · CRYSTAL STRUCTURE ANALYSIS OF ClpSN HETERODIMER TETRAGONAL FORM · the same entry in another collection · chain A against A, TM-score 1.00
- P0ABH9 · AlphaFold monomer V2.0 prediction for ATP-dependent clp protease ATP- binding subunit… · a predicted model of the same protein · chain A against A, TM-score 0.98
- P0A8Q6 · AlphaFold monomer V2.0 prediction for ATP-dependent clp protease adapter protein clps… · a predicted model of the same protein · chain B against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0ABH9
- Every structure of UniProt P0A8Q6
- Elsewhere: RCSB PDB 1MBV · PDBe 1MBV · UniProt P0ABH9 · UniProt P0A8Q6
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