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Mouse cadherin-10 EC1-2 adhesive fragment

Analyse Mouse cadherin-10 EC1-2 adhesive fragment in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6CG6
Type: protein
Length: 207 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cadherin-10
UniProt: P70408
Ligands: TAM, CA
Pockets: 1 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cadherin-10	protein	207	0% helix, 43% strand	P70408

Ligands and binding sites

TAM · Tris(hydroxyethyl)aminomethane · ligand · chains A
CA · Calcium ion · metal · 3 copies · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	95	0.41	0.77	18	empty

Compared structures

6CG6 · mouse cadherin-10 EC1-2 adhesive fragment · the same entry in another collection · chain A against A, TM-score 1.00
P70408 · AlphaFold monomer V2.0 prediction for cadherin-10 (P70408) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P70408
Elsewhere: RCSB PDB 6CG6 · PDBe 6CG6 · UniProt P70408

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