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Dnag primase C-terminal domain complex with ssb C-terminal peptide

Analyse Dnag primase C-terminal domain complex with ssb C-terminal peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6CBT
Type: protein
Length: 281 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA primase, single-stranded DNA-binding protein chimera
UniProt: P0ABS5, A0A0K3FKM0
Ligands: ZN

Structure

x-ray diffraction · 2 distinct chains · 68% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA primase, single-stranded DNA-binding protein chimera	protein	140	69% helix, 0% strand	P0ABS5, A0A0K3FKM0
B	DNA primase, single-stranded DNA-binding protein chimera	protein	141	67% helix, 0% strand	P0ABS5, A0A0K3FKM0

Ligands and binding sites

ZN · Zinc ion · metal · 3 copies · chains A, B
ACY · Acetic acid · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6CBT · DnaG Primase C-terminal domain complex with SSB C-terminal peptide · the same entry in another collection · chain A against A, TM-score 1.00
P0ABS5 · AlphaFold monomer V2.0 prediction for DNA primase (P0ABS5) · a predicted model of the same protein · chain A against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0ABS5
Every structure of UniProt A0A0K3FKM0
Elsewhere: RCSB PDB 6CBT · PDBe 6CBT · UniProt P0ABS5 · UniProt A0A0K3FKM0

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