Research workbench
X-ray structure of neob from streptomyces fradiae in complex with pmp
Analyse X-ray structure of neob from streptomyces fradiae in complex with pmp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6CBK
- Type
- protein
- Length
- 1,660 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q53U08
- Ligands
- PMP, NA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 409 | — | Q53U08 |
| B | — | protein | 419 | — | Q53U08 |
| C | — | protein | 410 | — | Q53U08 |
| D | — | protein | 422 | — | Q53U08 |
Ligands and binding sites
- PMP · 4'-deoxy-4'-aminopyridoxal-5'-phosphate · ligand · 4 copies · chains A, B, C, D
- NA · Sodium ion · metal · chains B, C, D
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CBK · X-ray structure of NeoB from Streptomyces fradiae in complex with PMP · the same entry in another collection · chain D against D, TM-score 1.00
- Q53U08 · AlphaFold monomer V2.0 prediction for neamine transaminase neon (Q53U08) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q53U08
- Elsewhere: RCSB PDB 6CBK · PDBe 6CBK · UniProt Q53U08
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