Research workbench
Structure of iron containing alcohol dehydrogenase from thermococcus thioreducens in an orthorhombic crystal form
Analyse Structure of iron containing alcohol dehydrogenase from thermococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6C76
- Type
- protein
- Length
- 756 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alcohol dehydrogenase
- UniProt
- A0A0Q2QQL1
- Ligands
- NAP, FE
- Pockets
- 6 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 58% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Alcohol dehydrogenase | protein | 378 | 58% helix, 12% strand | A0A0Q2QQL1 |
Ligands and binding sites
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
- FE · Fe (III) ion · metal · chains A
- ACY · Acetic acid · additive · chains B
- PGE · Triethylene glycol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 549 | 0.75 | 0.83 | 65 | NAP |
| 2 | 824 | 0.75 | 0.79 | 77 | ACY |
| 3 | 581 | 0.67 | 0.77 | 55 | empty |
| 4 | 104 | 0.47 | 0.80 | 15 | empty |
| 5 | 89 | 0.46 | 0.81 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1068 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 6C76 · Structure of Iron containing alcohol dehydrogenase from Thermococcus thioreducens in an… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0Q2QQL1
- Elsewhere: RCSB PDB 6C76 · PDBe 6C76 · UniProt A0A0Q2QQL1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.