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Residue assignment correction to the voltage gated calcium CAV1.1 rabbit alpha 1 subunit pdb entries 3JBR & 5GJV
Analyse Residue assignment correction to the voltage gated calcium CAV1.1 rabbit alpha… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6BYO
- Type
- protein
- Length
- 1,129 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Voltage-dependent L-type calcium channel subunit alpha-1S
- UniProt
- P07293
- Pockets
- 19 · best druggability 0.81
Structure
electron microscopy · 1 distinct chain · 64% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Voltage-dependent L-type calcium channel subunit alpha-1S | protein | 1129 | 64% helix, 2% strand | P07293 |
Pockets
19 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 629 | 0.81 | 0.85 | 63 | empty |
| 2 | 1021 | 0.74 | 0.77 | 80 | empty |
| 3 | 294 | 0.64 | 0.81 | 22 | empty |
| 4 | 535 | 0.64 | 0.75 | 56 | empty |
| 5 | 211 | 0.53 | 0.76 | 24 | empty |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 6BYO · Residue assignment correction to the voltage gated calcium Cav1.1 rabbit alpha 1 subunit… · the same entry in another collection · chain A against A, TM-score 1.00
- P07293 · AlphaFold monomer V2.0 prediction for voltage-dependent L-type calcium channel subunit… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07293
- Elsewhere: RCSB PDB 6BYO · PDBe 6BYO · UniProt P07293
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