Research workbench

Trastuzumab Fab V3 with 5-diphenyl meditope variant

Analyse Trastuzumab Fab V3 with 5-diphenyl meditope variant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6BAH
Type: protein
Length: 566 residues
Chains: 5
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P01834, Q6GMX6, Q51918, Q2UW42
Ligands: ACE

Structure

x-ray diffraction · 5 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	214	—	P01834
B	—	protein	223	—	Q6GMX6
E	—	protein	63	—	Q51918
C	—	protein	54	—	Q2UW42
D	—	protein	12	—	—

Ligands and binding sites

ACE · Acetyl group · ligand · chains E, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6BAH · Trastuzumab Fab v3 with 5-diphenyl meditope variant · the same entry in another collection · chain A against A, TM-score 1.00
P01834 · AlphaFold monomer V2.0 prediction for immunoglobulin kappa constant (P01834) · a predicted model of the same protein · chain A against A, TM-score 0.50

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01834
Every structure of UniProt Q6GMX6
Every structure of UniProt Q51918
Every structure of UniProt Q2UW42
Elsewhere: RCSB PDB 6BAH · PDBe 6BAH · UniProt P01834 · UniProt Q6GMX6 · UniProt Q51918 · UniProt Q2UW42

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.