Research workbench
Crystal structure of salicylic acid carboxyl methyltransferase (samt)
Analyse Crystal structure of salicylic acid carboxyl methyltransferase (samt) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1M6E
- Type
- protein
- Length
- 359 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- S-adenosyl-L-METHIONNINE:SALICYLIC acid carboxyl methyltransferase
- UniProt
- Q9SPV4
- Ligands
- SAH, SAL, LU
- Pockets
- 1 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | S-adenosyl-L-METHIONNINE:SALICYLIC acid carboxyl methyltransferase | protein | 359 | 34% helix, 16% strand | Q9SPV4 |
Ligands and binding sites
- SAH · S-adenosyl-L-homocysteine · ligand · chains X
- SAL · 2-hydroxybenzoic acid · ligand · chains X
- LU · Lutetium (III) ion · metal · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 247 | 0.83 | 0.95 | 46 | SAH, SAL |
Compared structures
- 1M6E · Crystal structure of salicylic acid carboxyl methyltransferase (samt) · the same entry in another collection · chain X against X, TM-score 1.00
- Q9SPV4 · AlphaFold monomer V2.0 prediction for salicylate carboxymethyltransferase (Q9SPV4) · a predicted model of the same protein · chain X against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SPV4
- Elsewhere: RCSB PDB 1M6E · PDBe 1M6E · UniProt Q9SPV4
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