Research workbench
HLA-DRB1*1402 in complex with vimentin-64CIT59-71
Analyse HLA-DRB1*1402 in complex with vimentin-64CIT59-71 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ATI
- Type
- protein
- Length
- 764 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P01903, A0A0A1I7H6
- Ligands
- CIR, NAG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 180 | — | P01903 |
| B, E | — | protein | 190 | — | A0A0A1I7H6 |
| C, F | — | protein | 12 | — | — |
Ligands and binding sites
- CIR · Citrulline · ligand · 2 copies · chains A, B, C, D, E, F
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A, B, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ATI · HLA-DRB1*1402 in complex with Vimentin-64Cit59-71 · the same entry in another collection · chain F against F, TM-score 1.00
- P01903 · AlphaFold monomer V2.0 prediction for HLA class II histocompatibility antigen, dr alpha… · a predicted model of the same protein · chain D against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01903
- Every structure of UniProt A0A0A1I7H6
- Elsewhere: RCSB PDB 6ATI · PDBe 6ATI · UniProt P01903 · UniProt A0A0A1I7H6
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