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Structure of GRP94 with methyl 3-chloro-2-(2-(1-(2-ethoxybenzyl)-1 H- imidazol-2-YL)ETHYL)-4,6-dihydroxybenzoate, a GRP94-selective inhibitor and promising therapeutic lead for treating myocilin- associated glaucoma

Analyse Structure of GRP94 with methyl 3-chloro-2-(2-(1-(2-ethoxybenzyl)-1 H… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6ASP
Type
protein
Length
432 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P41148
Ligands
V2C

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein215—P41148
B—protein217—P41148

Ligands and binding sites

  • V2C · methyl 3-chloro-2-(2-(1-(2-ethoxybenzyl)-1 H-imidazol-2-yl)ethyl)-4,6-dihydroxybenzoate · ligand · 2 copies · chains A, B
  • P33 · 3,6,9,12,15,18-hexaoxaicosane-1,20-diol · additive · 17 copies · chains A, B
  • GOL · Glycerol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6ASP · Structure of Grp94 with methyl 3-chloro-2-(2-(1-(2-ethoxybenzyl)-1… · the same entry in another collection · chain A against A, TM-score 1.00
  • P41148 · AlphaFold monomer V2.0 prediction for endoplasmin (P41148) · a predicted model of the same protein · chain A against A, TM-score 0.86

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