Research workbench

Solvated refinement of ca-loaded calbindin D9K

Analyse Solvated refinement of ca-loaded calbindin D9K in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1B1G
Type: protein
Length: 75 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (calbindin D9K)
UniProt: P02633
Ligands: CA
Pockets: 1 · best druggability 0.40

Structure

solution nmr · 1 distinct chain · 55% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (calbindin D9K)	protein	75	55% helix, 5% strand	P02633

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	87	0.40	0.77	16	empty

Compared structures

1B1G · Solvated refinement of ca-loaded calbindin D9K · the same entry in another collection · chain A against A, TM-score 1.00
P02633 · AlphaFold monomer V2.0 prediction for protein S100-G (P02633) · a predicted model of the same protein · chain A against A, TM-score 0.86

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02633
Elsewhere: RCSB PDB 1B1G · PDBe 1B1G · UniProt P02633

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