Research workbench
CA2+-independent C-type lectin spl-1 from saxidomus purpuratus
Analyse CA2+-independent C-type lectin spl-1 from saxidomus purpuratus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6A7T
- Type
- protein
- Length
- 275 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- N-acetylglucosamine-specific lectin
- UniProt
- A0A2Z6G7U6, A0A2Z6G7U3
- Ligands
- CA
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 2 distinct chains · 17% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | N-acetylglucosamine-specific lectin | protein | 137 | 15% helix, 38% strand | A0A2Z6G7U6 |
| B | N-acetylglucosamine-specific lectin | protein | 138 | 18% helix, 37% strand | A0A2Z6G7U3 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 71 | 0.33 | 0.76 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 349 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 disulfide (disulfide).
Compared structures
- 6A7T · Ca2+-independent C-type lectin SPL-1 from Saxidomus purpuratus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2Z6G7U6
- Every structure of UniProt A0A2Z6G7U3
- Elsewhere: RCSB PDB 6A7T · PDBe 6A7T · UniProt A0A2Z6G7U6 · UniProt A0A2Z6G7U3
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