Research workbench
Cyclic alpha-maltosyl-(1-->6)-maltose hydrolase from arthrobacter globiformis, ligand-free form
Analyse Cyclic alpha-maltosyl-(1-->6)-maltose hydrolase from arthrobacter globiformis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZXG
- Type
- protein
- Length
- 879 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyclic maltosyl-maltose hydrolase
- UniProt
- D2YYE1
- Ligands
- CA
- Pockets
- 4 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cyclic maltosyl-maltose hydrolase | protein | 440 | 36% helix, 20% strand | D2YYE1 |
| B | Cyclic maltosyl-maltose hydrolase | protein | 439 | 37% helix, 21% strand | D2YYE1 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 405 | 0.82 | 0.90 | 43 | empty |
| 2 | 58 | 0.57 | 0.90 | 14 | empty |
| 3 | 148 | 0.43 | 0.75 | 20 | empty |
| 4 | 140 | 0.42 | 0.75 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 1140 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 5ZXG · Cyclic alpha-maltosyl-(1-->6)-maltose hydrolase from Arthrobacter globiformis… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D2YYE1
- Elsewhere: RCSB PDB 5ZXG · PDBe 5ZXG · UniProt D2YYE1
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